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  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
PP1S88_153V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S88_153V6.1" - annotation not available in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S88_153V6.1annotation not available (442 aa)    
Predicted Functional Partners:
PP1S14_283V6.1
Predicted protein (148 aa)
           
  0.695
PP1S300_38V6.1
Predicted protein (538 aa)
           
  0.694
PP1S312_60V6.1
Predicted protein (434 aa)
           
  0.563
PP1S79_84V6.1
Predicted protein (153 aa)
           
  0.527
PP1S79_83V6.1
Predicted protein (135 aa)
           
  0.527
PP1S95_96V6.1
annotation not available (1060 aa)
     
   
  0.523
PP1S79_42V6.1
annotation not available (711 aa)
     
   
  0.523
PP1S43_42V6.2
annotation not available (941 aa)
     
   
  0.523
PP1S30_79V6.1
Uncharacterized protein (685 aa)
     
   
  0.523
HDA1509
Class II RPD3 type histone deacetylase protein (459 aa)
           
  0.508
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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