STRINGSTRING
PP1S88_58V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S88_58V6.1" - Homoserine dehydrogenase in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S88_58V6.1Homoserine dehydrogenase (371 aa)    
Predicted Functional Partners:
PP1S169_130V6.1
Predicted protein (405 aa)
 
  0.998
PP1S9_232V6.1
Annotation not available (574 aa)
   
  0.997
PP1S49_137V6.1
Predicted protein (575 aa)
   
  0.997
PP1S260_24V6.1
Predicted protein (576 aa)
   
  0.997
PP1S114_157V6.1
Predicted protein (578 aa)
   
  0.997
PP1S263_36V6.1
Predicted protein (415 aa)
   
  0.996
PP1S194_198V6.1
Predicted protein (924 aa)
 
0.987
PP1S88_62V6.1
Predicted protein (930 aa)
 
0.987
PP1S286_35V6.2
Aspartokinase (578 aa)
  0.986
PP1S162_64V6.1
Aspartokinase (577 aa)
  0.986
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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