STRINGSTRING
PP1S9067_2V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S9067_2V6.1" - Predicted protein in Physcomitrella patens
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S9067_2V6.1Predicted protein (109 aa)    
Predicted Functional Partners:
PP1S81_43V6.1
Annotation not available (933 aa)
     
      0.920
PP1S34_210V6.1
Annotation not available (747 aa)
     
      0.920
PP1S165_124V6.1
DIS3-like exonuclease 2 ; 3’-5’-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3’ end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3’ (1567 aa)
     
      0.920
PP1S70_202V6.1
Predicted protein (374 aa)
       
      0.918
PP1S61_97V6.1
Predicted protein (319 aa)
       
      0.918
PP1S2_610V6.2
Predicted protein (328 aa)
       
      0.918
PP1S190_71V6.1
Annotation not available (234 aa)
       
      0.918
PP1S58_147V6.1
Annotation not available (1356 aa)
     
 
  0.892
PP1S25_361V6.1
Predicted protein (476 aa)
         
  0.700
PP1S142_119V6.1
Annotation not available (445 aa)
         
  0.700
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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