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STRINGSTRING
PP1S926_1V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S926_1V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S926_1V6.1Predicted protein (977 aa)    
Predicted Functional Partners:
PP1S42_67V6.1
annotation not available (2040 aa)
     
 
  0.700
PP1S138_176V6.1
Predicted protein (2032 aa)
     
 
  0.700
PP1S234_67V6.1
Predicted protein (510 aa)
           
  0.678
PGE1501
Transcriptional repressor EED/ESC/FIE (376 aa)
     
 
  0.656
PP1S37_82V6.1
annotation not available (483 aa)
           
  0.621
PpMET1
DNA (cytosine-5)-methyltransferase; Cytosine-specific methyltransferase ; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family (1565 aa)
     
 
  0.588
PP1S169_131V6.1
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1200 aa)
     
      0.581
PP1S100_146V6.1
Polycomb group protein (999 aa)
     
 
  0.555
SDG1530
Histone-lysine N-methyltransferase (614 aa)
     
   
  0.540
PP1S17_341V6.1
annotation not available (948 aa)
     
 
  0.531
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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