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  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
PpSig5 protein (Physcomitrella patens) - STRING interaction network
"PpSig5" - Plastid sigma factor SIG5 in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PpSig5Plastid sigma factor SIG5 (632 aa)    
Predicted Functional Partners:
PP1S77_25V6.2
Predicted protein (216 aa)
       
 
  0.990
PP1S197_12V6.1
Predicted protein (145 aa)
   
 
  0.931
rpoA
DNA-directed RNA polymerase subunit alpha, chloroplastic; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (450 aa)
 
 
  0.930
PpCCA1b
Circadian clock-associated protein 1b (1000 aa)
     
   
  0.903
PpCCA1a
Cca1a circadian clock protein CCA1a (873 aa)
     
   
  0.903
PP1S230_73V6.1
annotation not available (249 aa)
   
        0.890
PP1S91_16V6.1
Predicted protein (685 aa)
   
   
  0.889
PP1S219_79V6.1
annotation not available (728 aa)
   
   
  0.889
PP1S54_118V6.1
Predicted protein; Belongs to the FPP/GGPP synthase family (470 aa)
   
   
  0.886
PP1S197_67V6.1
Predicted protein; Belongs to the FPP/GGPP synthase family (465 aa)
   
   
  0.886
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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