STRINGSTRING
PP1S94_153V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S94_153V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S94_153V6.1Predicted protein (350 aa)    
Predicted Functional Partners:
PP1S402_27V6.1
Predicted protein (556 aa)
     
  0.903
PP1S61_42V6.1
Predicted protein (1457 aa)
     
 
  0.899
PP1S30_193V6.1
Uncharacterized protein (2061 aa)
     
 
  0.880
PP1S9_445V6.1
Annotation not available (767 aa)
     
 
  0.880
SWDB1502
Histone H3 methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 (328 aa)
   
 
  0.851
SWDB1501
Histone H3 methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 (328 aa)
   
 
  0.846
PP1S6_203V6.1
Annotation not available (854 aa)
     
  0.837
PP1S74_129V6.1
Ubiquitin carboxyl-terminal hydrolase (373 aa)
     
  0.825
PP1S74_121V6.1
Ubiquitin carboxyl-terminal hydrolase (373 aa)
     
  0.825
PP1S5_405V6.1
Ubiquitin carboxyl-terminal hydrolase (371 aa)
     
  0.825
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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