• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
PpCCA1b protein (Physcomitrella patens) - STRING interaction network
"PpCCA1b" - Circadian clock-associated protein 1b in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PpCCA1bCircadian clock-associated protein 1b (1000 aa)    
Predicted Functional Partners:
PpPRR1
Circadian clock protein PRR1; Circadian response regulator 1a (907 aa)
     
 
  0.909
PpSig5
Plastid sigma factor SIG5 (632 aa)
     
   
  0.903
PpPRR2
annotation not available (641 aa)
     
 
  0.827
PpPRR4
Circadian clock protein PRR4; Circadian response regulator 2b (917 aa)
     
 
  0.714
PP1S241_31V6.1
Predicted protein (697 aa)
     
 
  0.705
PP1S288_23V6.1
Predicted protein; Belongs to the heat shock protein 70 family (662 aa)
     
 
  0.698
PP1S181_3V6.1
Predicted protein; Belongs to the heat shock protein 70 family (662 aa)
     
 
  0.698
PP1S488_7V6.1
Predicted protein (287 aa)
     
 
  0.676
PP1S19_93V6.1
Predicted protein (274 aa)
     
 
  0.676
PP1S34_87V6.1
Predicted protein; Belongs to the heat shock protein 70 family (780 aa)
     
 
  0.654
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
Server load: low (8%) [HD]