STRINGSTRING
cpk5 protein (Physcomitrella patens) - STRING interaction network
"cpk5" - Cpk5 calcium-dependent protein kinase in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpk5Cpk5 calcium-dependent protein kinase (524 aa)    
Predicted Functional Partners:
PP1S88_108V6.1
Predicted protein (232 aa)
       
  0.913
PP1S77_88V6.1
Annotation not available (187 aa)
       
  0.913
PP1S442_7V6.2
Predicted protein (244 aa)
       
  0.913
PP1S242_98V6.1
Predicted protein (179 aa)
       
  0.913
PP1S215_85V6.1
Predicted protein (192 aa)
       
  0.913
PP1S131_105V6.1
Predicted protein (195 aa)
       
  0.913
PP1S88_14V6.1
Predicted protein (159 aa)
     
  0.873
PP1S39_131V6.1
Predicted protein (133 aa)
     
  0.873
PP1S257_85V6.2
Annotation not available (565 aa)
     
  0.873
PP1S20_266V6.1
Annotation not available (211 aa)
     
  0.873
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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