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STRINGSTRING
SYP7A1 protein (Physcomitrella patens) - STRING interaction network
"SYP7A1" - Qc-SNARE, SYP7-family in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SYP7A1Qc-SNARE, SYP7-family ; Belongs to the syntaxin family (267 aa)    
Predicted Functional Partners:
SYP8
Qa-SNARE, SYP8/Ufe1p/Syntaxin 18-type (316 aa)
           
  0.867
PP1S35_276V6.1
Predicted protein (749 aa)
     
   
  0.751
SEC22A2-2
R-SNARE, SEC22-family ; Belongs to the synaptobrevin family (219 aa)
     
   
  0.672
SEC22
R-SNARE, SEC22-family ; Belongs to the synaptobrevin family (219 aa)
     
   
  0.672
SEC20
Qb-SNARE, Sec20-family (310 aa)
           
  0.633
SYP6A2
Qc-SNARE, SYP6/Tlg1p/Syntaxin 6 family (238 aa)
           
  0.610
SYP61A1
Qc-SNARE, SYP6/Tlg1p/Syntaxin 6 family (241 aa)
           
  0.610
PP1S90_215V6.1
Predicted protein (807 aa)
           
  0.577
PP1S73_205V6.1
Predicted protein (784 aa)
           
  0.577
PP1S392_36V6.1
Predicted protein (810 aa)
           
  0.577
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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