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  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
PP1S98_141V6.2 protein (Physcomitrella patens) - STRING interaction network
"PP1S98_141V6.2" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S98_141V6.2Predicted protein (361 aa)    
Predicted Functional Partners:
PP1S340_23V6.1
Predicted protein (109 aa)
           
  0.587
PP1S340_22V6.1
Predicted protein (291 aa)
           
  0.587
PP1S399_23V6.1
Predicted protein (349 aa)
           
  0.561
PP1S25_30V6.1
Predicted protein (339 aa)
           
  0.561
PP1S245_92V6.1
Predicted protein (343 aa)
           
  0.561
PP1S211_148V6.1
annotation not available (619 aa)
           
  0.523
PP1S273_65V6.2
Predicted protein (505 aa)
           
  0.521
PP1S123_154V6.1
Predicted protein (275 aa)
           
  0.521
PP1S118_125V6.1
Predicted protein (536 aa)
           
  0.521
PP1S104_10V6.1
Predicted protein (374 aa)
           
  0.521
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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