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STRINGSTRING
PP1S98_143V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S98_143V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S98_143V6.1Predicted protein (384 aa)    
Predicted Functional Partners:
3989066
Predicted protein; Belongs to the universal ribosomal protein uL16 family (561 aa)
   
 
  0.991
PP1S102_17V6.1
Predicted protein (617 aa)
     
 
  0.983
PP1S29_180V6.1
annotation not available (603 aa)
     
 
  0.982
PP1S207_6V6.1
Predicted protein (836 aa)
     
 
  0.982
PP1S74_120V6.1
Predicted protein (2186 aa)
     
 
  0.971
PP1S158_107V6.1
annotation not available (1339 aa)
     
 
  0.970
PP1S52_171V6.1
annotation not available (965 aa)
     
 
  0.970
PP1S53_101V6.1
annotation not available (1064 aa)
     
 
  0.969
PP1S78_50V6.1
Predicted protein (998 aa)
     
 
  0.968
PP1S93_182V6.1
RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)- acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation (1046 aa)
     
 
  0.965
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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