STRINGSTRING
PP1S98_43V6.2 protein (Physcomitrella patens) - STRING interaction network
"PP1S98_43V6.2" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S98_43V6.2Predicted protein (395 aa)    
Predicted Functional Partners:
PP1S60_59V6.1
Predicted protein (512 aa)
       
 
  0.655
PP1S490_9V6.1
Annotation not available (425 aa)
       
 
  0.655
PP1S112_141V6.1
Predicted protein (429 aa)
       
 
  0.655
PP1S160_96V6.1
Adenylyl cyclase-associated protein (512 aa)
       
      0.646
PP1S185_119V6.1
Predicted protein (264 aa)
       
      0.638
PP1S101_227V6.1
Predicted protein (317 aa)
       
      0.638
PP1S61_200V6.1
Predicted protein (302 aa)
       
 
  0.588
PP1S59_12V6.1
Annotation not available (135 aa)
       
 
  0.588
PP1S45_169V6.1
Predicted protein (302 aa)
       
 
  0.588
PP1S397_37V6.1
Predicted protein (303 aa)
       
 
  0.588
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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