STRINGSTRING
PP1S98_98V6.2 protein (Physcomitrella patens) - STRING interaction network
"PP1S98_98V6.2" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S98_98V6.2Predicted protein (253 aa)    
Predicted Functional Partners:
PP1S108_24V6.1
Predicted protein (1001 aa)
       
      0.874
PP1S31_72V6.1
Annotation not available (1352 aa)
       
      0.734
PP1S136_182V6.1
Annotation not available (1353 aa)
       
      0.734
PP1S85_15V6.1
Predicted protein (270 aa)
           
  0.570
PP1S20_64V6.1
Predicted protein (273 aa)
           
  0.570
PP1S206_32V6.1
Predicted protein (523 aa)
           
  0.505
PP1S235_42V6.1
Annotation not available (179 aa)
           
  0.497
PP1S328_42V6.1
Predicted protein (230 aa)
           
  0.491
PP1S27_216V6.1
Predicted protein (244 aa)
           
  0.491
PP1S7_472V6.1
Predicted protein (540 aa)
           
  0.480
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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