STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TIF6Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family. (245 aa)    
Predicted Functional Partners:
RPL31B
60S large subunit ribosomal protein.
  
 
 0.997
RPL20
60S ribosomal protein L20; Belongs to the eukaryotic ribosomal protein eL20 family.
  
 
 0.996
RPL3
60S large subunit ribosomal protein L3.e; Belongs to the universal ribosomal protein uL3 family.
  
 
 0.995
PICST_75790
Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.
   
 
 0.994
PICST_88185
Uncharacterized protein.
   
 
 0.994
PICST_59191
TRASH domain-containing protein.
   
 
 0.994
RPL10
Ribosomal protein L10.
   
 
 0.993
RPL34
Ribosomal protein L34.
  
 
 0.992
PICST_74639
Ribosomal protein L4/L1e.
   
 
 0.992
RPL26A
Ribosomal protein L26A (L33A) (YL33).
  
 
 0.992
Your Current Organism:
Scheffersomyces stipitis
NCBI taxonomy Id: 322104
Other names: Pichia stipitis CBS 6054, S. stipitis CBS 6054, Scheffersomyces stipitis CBS 6054
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.