STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HOS3Histone deacetylase. (708 aa)    
Predicted Functional Partners:
SRR1
Stress response regulator protein 1; Required for stress adaptation, morphogenesis and virulence.
    
 0.970
SKN7
Protein with similarity to DNA-binding region of heat shock transcription factors.
    
 0.970
NSP1
Nucleoporin NSP1 (Nuclear pore protein NSP1) (Nucleoskeletal-like protein) (P110).
     
 0.968
NSP2
Nucleoskeletal protein.
     
 0.968
PICST_74478
Uncharacterized protein.
    
 
 0.747
PICST_53146
Histone deacetylase.
    
 
 0.720
PICST_75957
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 
 0.707
SIR2
NAD-dependent histone deacetylase.
    
 
 0.685
SNT1
DNA-binding protein SNT1.
    
 0.684
PLO2
annotation not available
    
 
 0.676
Your Current Organism:
Scheffersomyces stipitis
NCBI taxonomy Id: 322104
Other names: Pichia stipitis CBS 6054, S. stipitis CBS 6054, Scheffersomyces stipitis CBS 6054
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.