Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ACO76614.1 | ACO80101.1 | Avin_03540 | Avin_39620 | ATP-dependent RNA helicase, DEAD box family; Belongs to the DEAD box helicase family. | NUDIX hydrolase. | 0.416 |
ACO76614.1 | nnrE | Avin_03540 | Avin_07490 | ATP-dependent RNA helicase, DEAD box family; Belongs to the DEAD box helicase family. | YjeF-related, C-terminal carbohydrate kinase domain-containing protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-h [...] | 0.861 |
ACO76614.1 | rph | Avin_03540 | Avin_02850 | ATP-dependent RNA helicase, DEAD box family; Belongs to the DEAD box helicase family. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.428 |
ACO77233.1 | ACO80101.1 | Avin_10010 | Avin_39620 | DEAD/DEAH box ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. | NUDIX hydrolase. | 0.416 |
ACO77233.1 | nnrE | Avin_10010 | Avin_07490 | DEAD/DEAH box ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. | YjeF-related, C-terminal carbohydrate kinase domain-containing protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-h [...] | 0.861 |
ACO77233.1 | rph | Avin_10010 | Avin_02850 | DEAD/DEAH box ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.428 |
ACO80101.1 | ACO76614.1 | Avin_39620 | Avin_03540 | NUDIX hydrolase. | ATP-dependent RNA helicase, DEAD box family; Belongs to the DEAD box helicase family. | 0.416 |
ACO80101.1 | ACO77233.1 | Avin_39620 | Avin_10010 | NUDIX hydrolase. | DEAD/DEAH box ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. | 0.416 |
ACO80101.1 | ACO80102.1 | Avin_39620 | Avin_39630 | NUDIX hydrolase. | NUDIX hydrolase. | 0.696 |
ACO80101.1 | ACO80103.1 | Avin_39620 | Avin_39640 | NUDIX hydrolase. | ErfK/YbiS/YcfS/YnhG-related protein. | 0.558 |
ACO80101.1 | birA | Avin_39620 | Avin_06050 | NUDIX hydrolase. | Biotin--acetyl-CoA-carboxylase ligase, bifunctional protein, BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon. | 0.677 |
ACO80101.1 | nnrE | Avin_39620 | Avin_07490 | NUDIX hydrolase. | YjeF-related, C-terminal carbohydrate kinase domain-containing protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-h [...] | 0.944 |
ACO80101.1 | proC | Avin_39620 | Avin_03070 | NUDIX hydrolase. | Delta 1-pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline. | 0.679 |
ACO80101.1 | purT | Avin_39620 | Avin_39610 | NUDIX hydrolase. | Phosphoribosylglycinamide formyltransferase; Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate; Belongs to the PurK/PurT family. | 0.483 |
ACO80101.1 | rnr | Avin_39620 | Avin_07620 | NUDIX hydrolase. | Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.781 |
ACO80101.1 | rph | Avin_39620 | Avin_02850 | NUDIX hydrolase. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.707 |
ACO80102.1 | ACO80101.1 | Avin_39630 | Avin_39620 | NUDIX hydrolase. | NUDIX hydrolase. | 0.696 |
ACO80102.1 | ACO80103.1 | Avin_39630 | Avin_39640 | NUDIX hydrolase. | ErfK/YbiS/YcfS/YnhG-related protein. | 0.744 |
ACO80103.1 | ACO80101.1 | Avin_39640 | Avin_39620 | ErfK/YbiS/YcfS/YnhG-related protein. | NUDIX hydrolase. | 0.558 |
ACO80103.1 | ACO80102.1 | Avin_39640 | Avin_39630 | ErfK/YbiS/YcfS/YnhG-related protein. | NUDIX hydrolase. | 0.744 |
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