Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Nham_0235 | Nham_0354 | Nham_0235 | Nham_0354 | PAS/PAC sensor hybrid histidine kinase. | Methyl-accepting chemotaxis sensory transducer. | 0.649 |
Nham_0235 | Nham_1495 | Nham_0235 | Nham_1495 | PAS/PAC sensor hybrid histidine kinase. | MotA/TolQ/ExbB proton channel. | 0.570 |
Nham_0235 | Nham_3372 | Nham_0235 | Nham_3372 | PAS/PAC sensor hybrid histidine kinase. | MCP methyltransferase, CheR-type. | 0.548 |
Nham_0235 | Nham_3375 | Nham_0235 | Nham_3375 | PAS/PAC sensor hybrid histidine kinase. | CheW protein. | 0.907 |
Nham_0235 | Nham_3376 | Nham_0235 | Nham_3376 | PAS/PAC sensor hybrid histidine kinase. | CheA signal transduction histidine kinase. | 0.993 |
Nham_0235 | Nham_3989 | Nham_0235 | Nham_3989 | PAS/PAC sensor hybrid histidine kinase. | Hypothetical protein. | 0.993 |
Nham_0235 | Nham_3990 | Nham_0235 | Nham_3990 | PAS/PAC sensor hybrid histidine kinase. | MCP methyltransferase, CheR-type. | 0.917 |
Nham_0235 | cheB | Nham_0235 | Nham_3373 | PAS/PAC sensor hybrid histidine kinase. | Response regulator receiver modulated CheB methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. | 0.745 |
Nham_0235 | flhA | Nham_0235 | Nham_3367 | PAS/PAC sensor hybrid histidine kinase. | Flagellar biosynthesis protein FlhA; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family. | 0.511 |
Nham_0354 | Nham_0235 | Nham_0354 | Nham_0235 | Methyl-accepting chemotaxis sensory transducer. | PAS/PAC sensor hybrid histidine kinase. | 0.649 |
Nham_0354 | Nham_1495 | Nham_0354 | Nham_1495 | Methyl-accepting chemotaxis sensory transducer. | MotA/TolQ/ExbB proton channel. | 0.702 |
Nham_0354 | Nham_3370 | Nham_0354 | Nham_3370 | Methyl-accepting chemotaxis sensory transducer. | ATPase FliI/YscN. | 0.694 |
Nham_0354 | Nham_3372 | Nham_0354 | Nham_3372 | Methyl-accepting chemotaxis sensory transducer. | MCP methyltransferase, CheR-type. | 0.883 |
Nham_0354 | Nham_3375 | Nham_0354 | Nham_3375 | Methyl-accepting chemotaxis sensory transducer. | CheW protein. | 0.976 |
Nham_0354 | Nham_3376 | Nham_0354 | Nham_3376 | Methyl-accepting chemotaxis sensory transducer. | CheA signal transduction histidine kinase. | 0.998 |
Nham_0354 | Nham_3989 | Nham_0354 | Nham_3989 | Methyl-accepting chemotaxis sensory transducer. | Hypothetical protein. | 0.939 |
Nham_0354 | Nham_3990 | Nham_0354 | Nham_3990 | Methyl-accepting chemotaxis sensory transducer. | MCP methyltransferase, CheR-type. | 0.924 |
Nham_0354 | cheB | Nham_0354 | Nham_3373 | Methyl-accepting chemotaxis sensory transducer. | Response regulator receiver modulated CheB methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. | 0.869 |
Nham_0354 | flhA | Nham_0354 | Nham_3367 | Methyl-accepting chemotaxis sensory transducer. | Flagellar biosynthesis protein FlhA; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family. | 0.652 |
Nham_1495 | Nham_0235 | Nham_1495 | Nham_0235 | MotA/TolQ/ExbB proton channel. | PAS/PAC sensor hybrid histidine kinase. | 0.570 |
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