Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Nham_0365 | Nham_0366 | Nham_0365 | Nham_0366 | Prephenate dehydratase. | Putative transposase. | 0.634 |
Nham_0365 | Nham_0673 | Nham_0365 | Nham_0673 | Prephenate dehydratase. | Prephenate dehydrogenase. | 0.968 |
Nham_0365 | Nham_1103 | Nham_0365 | Nham_1103 | Prephenate dehydratase. | Aminotransferase. | 0.989 |
Nham_0365 | Nham_1118 | Nham_0365 | Nham_1118 | Prephenate dehydratase. | Phosphoserine aminotransferase apoenzyme; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine. | 0.739 |
Nham_0365 | Nham_1334 | Nham_0365 | Nham_1334 | Prephenate dehydratase. | Pyridoxal-dependent decarboxylase. | 0.808 |
Nham_0365 | aroC | Nham_0365 | Nham_0770 | Prephenate dehydratase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.597 |
Nham_0365 | aroE | Nham_0365 | Nham_1109 | Prephenate dehydratase. | Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). | 0.651 |
Nham_0365 | hisC | Nham_0365 | Nham_0674 | Prephenate dehydratase. | Histidinol phosphate aminotransferase apoenzyme; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. | 0.937 |
Nham_0365 | katG | Nham_0365 | Nham_0037 | Prephenate dehydratase. | Catalase/peroxidase HPI; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily. | 0.800 |
Nham_0365 | kdsA | Nham_0365 | Nham_1739 | Prephenate dehydratase. | 2-dehydro-3-deoxyphosphooctonate aldolase; Belongs to the KdsA family. | 0.898 |
Nham_0366 | Nham_0365 | Nham_0366 | Nham_0365 | Putative transposase. | Prephenate dehydratase. | 0.634 |
Nham_0673 | Nham_0365 | Nham_0673 | Nham_0365 | Prephenate dehydrogenase. | Prephenate dehydratase. | 0.968 |
Nham_0673 | Nham_1103 | Nham_0673 | Nham_1103 | Prephenate dehydrogenase. | Aminotransferase. | 0.911 |
Nham_0673 | Nham_1118 | Nham_0673 | Nham_1118 | Prephenate dehydrogenase. | Phosphoserine aminotransferase apoenzyme; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine. | 0.539 |
Nham_0673 | Nham_1334 | Nham_0673 | Nham_1334 | Prephenate dehydrogenase. | Pyridoxal-dependent decarboxylase. | 0.807 |
Nham_0673 | aroC | Nham_0673 | Nham_0770 | Prephenate dehydrogenase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.853 |
Nham_0673 | aroE | Nham_0673 | Nham_1109 | Prephenate dehydrogenase. | Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). | 0.423 |
Nham_0673 | hisC | Nham_0673 | Nham_0674 | Prephenate dehydrogenase. | Histidinol phosphate aminotransferase apoenzyme; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. | 0.997 |
Nham_1103 | Nham_0365 | Nham_1103 | Nham_0365 | Aminotransferase. | Prephenate dehydratase. | 0.989 |
Nham_1103 | Nham_0673 | Nham_1103 | Nham_0673 | Aminotransferase. | Prephenate dehydrogenase. | 0.911 |
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