STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nham_0741Type II secretion system protein E. (569 aa)    
Predicted Functional Partners:
Nham_0740
Type II secretion system protein.
 
 
 0.998
Nham_0739
General secretion pathway protein G.
 
 
 0.988
Nham_0734
Fimbrial assembly.
 
 
 0.974
Nham_0737
General secretion pathway protein I.
  
 
 0.957
Nham_0742
Type II and III secretion system protein.
 
  
 0.898
Nham_0735
Putative general secretory pathway protein K.
 
  
 0.897
Nham_0738
General secretion pathway protein H.
 
   
 0.864
Nham_0736
Putative general secretion pathway protein J.
     
 0.798
Nham_0731
Peptidase A24A, prepilin type IV; Belongs to the peptidase A24 family.
 
 
 0.777
Nham_0732
Putative general secretion pathway protein N.
     
 0.730
Your Current Organism:
Nitrobacter hamburgensis
NCBI taxonomy Id: 323097
Other names: N. hamburgensis X14, Nitrobacter hamburgensis X14, Nitrobacter hamburgensis str. X14, Nitrobacter hamburgensis strain X14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.