STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nham_0933Phenylacetic acid catabolic. (250 aa)    
Predicted Functional Partners:
Nham_0929
Phenylacetic acid degradation B.
 
 0.997
Nham_0932
Ferredoxin.
 
 0.997
Nham_0931
Phenylacetate-CoA oxygenase, PaaJ subunit.
 
 
 0.994
Nham_0930
Phenylacetate-CoA oxygenase, PaaI subunit.
 
  
  0.991
Nham_0928
Phenylacetate-CoA oxygenase, PaaG subunit.
 
  
  0.988
Nham_0937
Phenylacetic acid degradation protein PaaD.
 
 
 0.967
Nham_0938
Short chain enoyl-CoA hydratase / Enoyl-CoA hydratase.
 
 
  0.941
Nham_0934
Phenylacetic acid degradation protein paaN.
 
  
 0.892
Nham_0935
Transcriptional regulator, TetR family.
  
     0.591
Nham_0936
phenylacetate-CoA ligase.
 
  
 0.493
Your Current Organism:
Nitrobacter hamburgensis
NCBI taxonomy Id: 323097
Other names: N. hamburgensis X14, Nitrobacter hamburgensis X14, Nitrobacter hamburgensis str. X14, Nitrobacter hamburgensis strain X14
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