STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nham_1116Conserved hypothetical protein. (290 aa)    
Predicted Functional Partners:
Nham_0390
Pilus assembly protein CpaD.
  
     0.750
Nham_2239
Conserved hypothetical protein.
  
     0.717
Nham_2049
Invasion associated locus B.
  
     0.709
Nham_2467
Conserved hypothetical protein.
  
     0.699
Nham_3412
Conserved hypothetical protein.
  
     0.697
Nham_2957
Putative porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
 
 0.695
Nham_4022
Conserved hypothetical protein.
  
     0.688
Nham_2265
Putative porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
 
 0.679
Nham_2080
Putative outer-membrane protein precursor.
  
     0.678
Nham_1666
OmpA-like transmembrane region.
  
     0.677
Your Current Organism:
Nitrobacter hamburgensis
NCBI taxonomy Id: 323097
Other names: N. hamburgensis X14, Nitrobacter hamburgensis X14, Nitrobacter hamburgensis str. X14, Nitrobacter hamburgensis strain X14
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