Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Nham_0390 | Nham_1116 | Pilus assembly protein CpaD. | Conserved hypothetical protein. | 0.750 |
Nham_0390 | Nham_2049 | Pilus assembly protein CpaD. | Invasion associated locus B. | 0.492 |
Nham_0390 | Nham_2239 | Pilus assembly protein CpaD. | Conserved hypothetical protein. | 0.600 |
Nham_0390 | Nham_2467 | Pilus assembly protein CpaD. | Conserved hypothetical protein. | 0.748 |
Nham_0390 | Nham_3412 | Pilus assembly protein CpaD. | Conserved hypothetical protein. | 0.762 |
Nham_0390 | Nham_4022 | Pilus assembly protein CpaD. | Conserved hypothetical protein. | 0.489 |
Nham_1116 | Nham_0390 | Conserved hypothetical protein. | Pilus assembly protein CpaD. | 0.750 |
Nham_1116 | Nham_1666 | Conserved hypothetical protein. | OmpA-like transmembrane region. | 0.677 |
Nham_1116 | Nham_2049 | Conserved hypothetical protein. | Invasion associated locus B. | 0.709 |
Nham_1116 | Nham_2080 | Conserved hypothetical protein. | Putative outer-membrane protein precursor. | 0.678 |
Nham_1116 | Nham_2239 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.717 |
Nham_1116 | Nham_2265 | Conserved hypothetical protein. | Putative porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane. | 0.679 |
Nham_1116 | Nham_2467 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.699 |
Nham_1116 | Nham_2957 | Conserved hypothetical protein. | Putative porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane. | 0.695 |
Nham_1116 | Nham_3412 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.697 |
Nham_1116 | Nham_4022 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.688 |
Nham_1666 | Nham_1116 | OmpA-like transmembrane region. | Conserved hypothetical protein. | 0.677 |
Nham_1666 | Nham_2049 | OmpA-like transmembrane region. | Invasion associated locus B. | 0.753 |
Nham_1666 | Nham_2239 | OmpA-like transmembrane region. | Conserved hypothetical protein. | 0.745 |
Nham_1666 | Nham_2265 | OmpA-like transmembrane region. | Putative porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane. | 0.744 |
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