STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nham_2803Hypothetical protein; Belongs to the CoA-transferase III family. (181 aa)    
Predicted Functional Partners:
Nham_0934
Phenylacetic acid degradation protein paaN.
  
 0.588
Nham_0357
3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 
 0.520
Nham_1087
3-hydroxyacyl-CoA dehydrogenase.
  
 
 0.520
Nham_2801
O-antigen polymerase.
 
     0.497
Nham_2636
Heterodimeric methylmalonyl-CoA mutase small subunit.
     
 0.486
Nham_2638
Heterodimeric methylmalonyl-CoA mutase large subunit precursor.
     
 0.486
Nham_2705
Citrate lyase; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.477
Nham_2802
Glycosyl transferase, family 4.
       0.460
Nham_3175
Dienelactone hydrolase.
  
  
 0.451
Nham_3384
Thiamine pyrophosphate enzyme-like TPP-binding protein.
 
 
 0.438
Your Current Organism:
Nitrobacter hamburgensis
NCBI taxonomy Id: 323097
Other names: N. hamburgensis X14, Nitrobacter hamburgensis X14, Nitrobacter hamburgensis str. X14, Nitrobacter hamburgensis strain X14
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