STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nham_3336Conserved hypothetical protein. (108 aa)    
Predicted Functional Partners:
Nham_3337
Phage terminase GpA.
 
    0.935
Nham_3338
Conserved hypothetical protein.
 
    0.876
Nham_2392
Phage terminase GpA.
 
    0.829
Nham_3333
Phage-related baseplate assembly protein V.
 
     0.791
Nham_3334
Conserved hypothetical protein.
       0.763
Nham_3335
Conserved hypothetical protein.
       0.761
Nham_3332
GPW/gp25.
 
     0.724
Nham_2391
Phage portal protein, lambda.
 
    0.717
Nham_3331
Baseplate J-like protein.
 
     0.712
Nham_2393
Conserved hypothetical protein.
 
    0.689
Your Current Organism:
Nitrobacter hamburgensis
NCBI taxonomy Id: 323097
Other names: N. hamburgensis X14, Nitrobacter hamburgensis X14, Nitrobacter hamburgensis str. X14, Nitrobacter hamburgensis strain X14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.