STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nham_3404Sodium/proton antiporter, NhaD family; TC 2.A.62. (406 aa)    
Predicted Functional Partners:
Nham_2110
Malate dehydrogenase (oxaloacetate decarboxylating) (NADP+)., Phosphate acetyltransferase.
  
  
 0.556
Nham_1810
Conserved hypothetical protein.
  
     0.538
Nham_1010
Multicomponent K+:H+ antiporter subunit A; TC 2.A.63.1.1; TC 2.A.63.1.1.
  
  
 0.526
Nham_3707
ATPase.
  
     0.491
Nham_1678
Phosphate transporter.
  
 
 0.468
Nham_3405
Flavin reductase-like, FMN-binding protein.
       0.461
Nham_2170
Tetratricopeptide TPR_2.
  
     0.458
Nham_3406
Acyl-CoA dehydrogenase.
       0.444
Nham_0274
Periplasmic sensor hybrid histidine kinase.
  
  
 0.403
Nham_3397
Conserved hypothetical protein.
  
     0.401
Your Current Organism:
Nitrobacter hamburgensis
NCBI taxonomy Id: 323097
Other names: N. hamburgensis X14, Nitrobacter hamburgensis X14, Nitrobacter hamburgensis str. X14, Nitrobacter hamburgensis strain X14
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