Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Nham_0555 | Nham_3537 | Nham_0555 | Nham_3537 | Dihydroorotate oxidase A; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | Inositol-1(or 4)-monophosphatase. | 0.419 |
Nham_0555 | rpoC | Nham_0555 | Nham_1532 | Dihydroorotate oxidase A; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.428 |
Nham_3181 | Nham_3537 | Nham_3181 | Nham_3537 | Inositol monophosphatase. | Inositol-1(or 4)-monophosphatase. | 0.926 |
Nham_3181 | nusA | Nham_3181 | Nham_0029 | Inositol monophosphatase. | NusA antitermination factor; Participates in both transcription termination and antitermination. | 0.716 |
Nham_3181 | nusB | Nham_3181 | Nham_1819 | Inositol monophosphatase. | NusB antitermination factor; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | 0.580 |
Nham_3181 | nusG | Nham_3181 | Nham_1526 | Inositol monophosphatase. | Transcription antitermination protein nusG; Participates in transcription elongation, termination and antitermination. | 0.719 |
Nham_3181 | rpoB | Nham_3181 | Nham_1531 | Inositol monophosphatase. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.679 |
Nham_3181 | rpoC | Nham_3181 | Nham_1532 | Inositol monophosphatase. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.679 |
Nham_3181 | rpoZ | Nham_3181 | Nham_2256 | Inositol monophosphatase. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.734 |
Nham_3535 | Nham_3536 | Nham_3535 | Nham_3536 | Thiamine monophosphate synthase. | Sel1. | 0.787 |
Nham_3535 | Nham_3537 | Nham_3535 | Nham_3537 | Thiamine monophosphate synthase. | Inositol-1(or 4)-monophosphatase. | 0.631 |
Nham_3536 | Nham_3535 | Nham_3536 | Nham_3535 | Sel1. | Thiamine monophosphate synthase. | 0.787 |
Nham_3536 | Nham_3537 | Nham_3536 | Nham_3537 | Sel1. | Inositol-1(or 4)-monophosphatase. | 0.604 |
Nham_3537 | Nham_0555 | Nham_3537 | Nham_0555 | Inositol-1(or 4)-monophosphatase. | Dihydroorotate oxidase A; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | 0.419 |
Nham_3537 | Nham_3181 | Nham_3537 | Nham_3181 | Inositol-1(or 4)-monophosphatase. | Inositol monophosphatase. | 0.926 |
Nham_3537 | Nham_3535 | Nham_3537 | Nham_3535 | Inositol-1(or 4)-monophosphatase. | Thiamine monophosphate synthase. | 0.631 |
Nham_3537 | Nham_3536 | Nham_3537 | Nham_3536 | Inositol-1(or 4)-monophosphatase. | Sel1. | 0.604 |
Nham_3537 | nusA | Nham_3537 | Nham_0029 | Inositol-1(or 4)-monophosphatase. | NusA antitermination factor; Participates in both transcription termination and antitermination. | 0.716 |
Nham_3537 | nusB | Nham_3537 | Nham_1819 | Inositol-1(or 4)-monophosphatase. | NusB antitermination factor; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | 0.553 |
Nham_3537 | nusG | Nham_3537 | Nham_1526 | Inositol-1(or 4)-monophosphatase. | Transcription antitermination protein nusG; Participates in transcription elongation, termination and antitermination. | 0.719 |
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