STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noc_2979PAS sensor, serine phosphatase RsbU regulator of sigma subunit. (754 aa)    
Predicted Functional Partners:
Noc_1271
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase.
 
 0.999
Noc_1758
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase.
 
 0.987
Noc_0376
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase.
 
 
 0.982
Noc_2682
Diguanylate cyclase/phosphodiesterase.
 
 
 0.972
Noc_2977
Anti-sigma regulatory factor (Ser/Thr protein kinase).
 
 
 0.965
Noc_1609
Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s).
 
 
0.924
Noc_2976
Anti-sigma factor antagonist; Belongs to the anti-sigma-factor antagonist family.
 
 
 0.923
Noc_1400
PAS/PAC sensor hybrid histidine kinase.
 
0.915
Noc_1703
PAS/PAC sensor signal transduction histidine kinase.
  
0.912
Noc_0226
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s).
 
 
 0.896
Your Current Organism:
Nitrosococcus oceani
NCBI taxonomy Id: 323261
Other names: N. oceani ATCC 19707, Nitrosococcus oceani ATCC 19707, Nitrosococcus oceani C-107, Nitrosococcus oceani NCIMB 11848, Nitrosococcus oceani str. ATCC 19707, Nitrosococcus oceani strain ATCC 19707
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.