STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pepAPepA aminopeptidase. Metallo peptidase. MEROPS family M17; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides. (502 aa)    
Predicted Functional Partners:
Shew_2851
PFAM: peptidase M17, leucyl aminopeptidase domain protein; KEGG: she:Shewmr4_0949 peptidase M17, leucyl aminopeptidase domain protein; Belongs to the peptidase M17 family.
  
 
 
0.928
Shew_3127
PepB aminopeptidase; Probably plays an important role in intracellular peptide degradation.
  
  
 
0.925
Shew_1677
PFAM: peptidase M17, leucyl aminopeptidase domain protein; KEGG: cps:CPS_4956 cytosol aminopeptidase family protein.
  
  
 
0.921
Shew_2852
KEGG: shm:Shewmr7_0986 aminoacyl-histidine dipeptidase; TIGRFAM: aminoacyl-histidine dipeptidase; PFAM: peptidase M20; peptidase dimerisation domain protein.
   
 
 0.912
gshB
PFAM: glutathione synthetase, ATP-binding; RimK domain protein ATP-grasp; KEGG: vvy:VVA0031 putative glutathione synthase; Belongs to the prokaryotic GSH synthase family.
   
 
 0.911
gshB-2
KEGG: shm:Shewmr7_3333 glutathione synthetase; TIGRFAM: glutathione synthetase; PFAM: glutathione synthetase domain protein; glutathione synthetase, ATP-binding; RimK domain protein ATP-grasp; Belongs to the prokaryotic GSH synthase family.
   
 
 0.911
Shew_0835
PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: she:Shewmr4_3040 aminopeptidase N.
   
 0.910
Shew_1803
TIGRFAM: aminopeptidase N; PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: shm:Shewmr7_1749 aminopeptidase N.
   
 0.910
Shew_2158
KEGG: she:Shewmr4_2297 gamma-glutamyltransferase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase.
     
 0.908
Shew_2160
KEGG: she:Shewmr4_2301 dipeptidase, putative; TIGRFAM: dipeptidase, putative; PFAM: peptidase M20; peptidase dimerisation domain protein.
  
 
 0.903
Your Current Organism:
Shewanella loihica
NCBI taxonomy Id: 323850
Other names: S. loihica PV-4, Shewanella loihica PV-4, Shewanella loihica str. PV-4, Shewanella loihica strain PV-4, Shewanella sp. PV-4
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