STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Shew_3726PFAM: protein of unknown function DUF1488; KEGG: vpa:VP3032 hypothetical protein. (90 aa)    
Predicted Functional Partners:
aroE
Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
  
  
 0.850
Shew_1627
PFAM: protein of unknown function UPF0227; KEGG: shm:Shewmr7_1806 protein of unknown function UPF0227; Belongs to the UPF0227 family.
  
     0.740
lapA
Protein of unknown function DUF1049; Involved in the assembly of lipopolysaccharide (LPS). Belongs to the LapA family.
  
     0.718
Shew_0889
KEGG: shm:Shewmr7_3097 hypothetical protein.
  
     0.714
Shew_2486
KEGG: she:Shewmr4_2473 hypothetical protein; Belongs to the UPF0319 family.
  
     0.691
Shew_3158
PFAM: Polysulphide reductase, NrfD; KEGG: shm:Shewmr7_3835 polysulphide reductase, NrfD.
  
     0.646
Shew_2228
Inosine-guanosine kinase; PFAM: PfkB domain protein; KEGG: shm:Shewmr7_2319 inosine kinase.
  
     0.613
Shew_2652
KEGG: shm:Shewmr7_2726 hypothetical protein.
  
     0.603
Shew_2327
KEGG: sfr:Sfri_1783 hypothetical protein.
  
     0.596
Shew_3156
KEGG: sfr:Sfri_0615 hypothetical protein.
  
     0.582
Your Current Organism:
Shewanella loihica
NCBI taxonomy Id: 323850
Other names: S. loihica PV-4, Shewanella loihica PV-4, Shewanella loihica str. PV-4, Shewanella loihica strain PV-4, Shewanella sp. PV-4
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