STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xynA1Endo-1,4-beta-xylanase; Catalyzes the depolymerization of methylglucuronoxylan (MeGAXn), a beta-1,4 xylan in which 10% to 20% of the xylose residues are substituted with alpha-1,2-4-O-methylglucuronate (MeGA) residues, which is predominant in hemicellulose fractions of hardwood and crop residues. Generates xylobiose (X2) and aldotetrauronate (MeGAX3) as the predominant products of MeGAXn hydrolysis; these products are then directly assimilated by the bacterium for subsequent metabolism. Thus, allows the bacterium to efficiently use polymeric MeGAXn as a growth substrate. (1462 aa)    
Predicted Functional Partners:
aguA
Alpha-glucuronidase; PFAM: Glycosyl hydrolase 67 middle domain protein; glycosyl hydrolase 67 C-teriminal domain protein; glycoside hydrolase family 67; KEGG: bha:BH1061 alpha-glucuronidase; Belongs to the glycosyl hydrolase 67 family.
 
   
 0.750
ACS99859.1
PFAM: glycoside hydrolase family 8; KEGG: bha:BH2105 xylanase Y.
 
   
 0.711
ACT00181.1
PFAM: glycoside hydrolase family 9; glycoside hydrolase family 9 domain protein Ig domain protein; KEGG: cja:CJA_1633 endo-1,4-beta glucanase, putative, cel9B.
 
   
 0.686
ACT03278.1
Endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 11; KEGG: bsu:BSU18840 endo-1,4-beta-xylanase; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
  
   
 0.675
ACT00593.1
KEGG: bha:BH1913 hypothetical protein.
  
     0.650
lplA
PFAM: extracellular solute-binding protein family 1; KEGG: bha:BH2111 hypothetical protein.
  
     0.646
ACT02885.1
PFAM: glycoside hydrolase family 43; KEGG: sus:Acid_2993 glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.640
ACT02362.1
PFAM: extracellular solute-binding protein family 1; KEGG: bha:BH1913 hypothetical protein.
  
     0.621
ACT04581.1
KEGG: cja:CJA_3068 hypothetical protein.
  
     0.621
ACT03927.1
KEGG: bha:BH2111 hypothetical protein.
  
     0.605
Your Current Organism:
Paenibacillus sp. JDR2
NCBI taxonomy Id: 324057
Other names: P. sp. JDR-2, Paenibacillus sp. JDR-2
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