• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Pjdr2_1505 protein (Paenibacillus sp. JDR2) - STRING interaction network
"Pjdr2_1505" - PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding in Paenibacillus sp. JDR2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pjdr2_1505PFAM- D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG- baa-BA_0009 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain (324 aa)    
Predicted Functional Partners:
Pjdr2_0047
KEGG- tmz-Tmz1t_0151 glycerate kinase; TIGRFAM- glycerate kinase; PFAM- glycerate kinase; Belongs to the glycerate kinase type-1 family (379 aa)
       
    0.921
Pjdr2_5139
TIGRFAM- 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM- KDPG and KHG aldolase; KEGG- scl-sce5154 KDPG and KHG aldolase (210 aa)
       
  0.917
Pjdr2_0764
TIGRFAM- 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM- KDPG and KHG aldolase; KEGG- hypothetical protein (222 aa)
       
  0.917
Pjdr2_5898
PFAM- Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG- bsu-BSU38370 hypothetical protein (129 aa)
   
  0.915
Pjdr2_5522
PFAM- Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG- bar-GBAA2111 glyoxalase family protein (124 aa)
   
  0.915
Pjdr2_3593
TIGRFAM- gluconate kinase; PFAM- carbohydrate kinase FGGY; KEGG- bar-GBAA3428 gluconate kinase; Belongs to the FGGY kinase family (512 aa)
   
 
  0.907
Pjdr2_1792
PFAM- carbohydrate kinase FGGY; KEGG- bha-BH2676 gluconate kinase (489 aa)
   
 
  0.907
Pjdr2_4006
TIGRFAM- HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM- Haloacid dehalogenase domain protein hydrolase; KEGG- pag-PLES_00661 putative phosphatase (221 aa)
   
 
    0.902
Pjdr2_0215
TIGRFAM- HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM- Haloacid dehalogenase domain protein hydrolase; KEGG- baa-BA_0894 haloacid dehalogenase-like hydrolase (257 aa)
   
 
    0.902
ilvA
L-threonine dehydratase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA (422 aa)
     
 
  0.820
Your Current Organism:
Paenibacillus sp. JDR2
NCBI taxonomy Id: 324057
Other names: P. sp. JDR-2, Paenibacillus sp. JDR-2, Paenibacillus sp. JDR2
Server load: low (14%) [HD]