STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caur_0242KEGG: rca:Rcas_2266 hypothetical protein. (391 aa)    
Predicted Functional Partners:
Caur_1679
KEGG: rrs:RoseRS_3713 hypothetical protein.
  
     0.698
Caur_2096
PFAM: N-acetylmuramoyl-L-alanine amidase family 2; PA14 domain protein; SMART: Animal peptidoglycan recognition protein PGRP; KEGG: rrs:RoseRS_1610 N-acetylmuramoyl-L-alanine amidase, family 2.
  
     0.654
Caur_1680
KEGG: rrs:RoseRS_4040 hypothetical protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.650
Caur_1656
KEGG: rrs:RoseRS_0006 hypothetical protein.
  
     0.623
Caur_0871
PFAM: regulatory protein AsnC/Lrp family; KEGG: rca:Rcas_3945 transcriptional regulator, AsnC family.
  
     0.619
Caur_1608
PFAM: PHP domain protein; AAA-4 family protein; SMART: phosphoesterase PHP domain protein; KEGG: rrs:RoseRS_1312 AAA-4 family protein.
  
     0.597
Caur_2549
KEGG: rrs:RoseRS_0243 glycosyl transferase, family 39.
  
     0.583
Caur_2834
PFAM: peptidase C60 sortase A and B; KEGG: rca:Rcas_3681 peptidase C60 sortase A and B.
  
     0.581
Caur_1864
PFAM: N-acetylmuramoyl-L-alanine amidase family 2; KEGG: rca:Rcas_2671 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD.
  
     0.568
Caur_0243
KEGG: mta:Moth_2503 selenocysteine-specific translation elongation factor; TIGRFAM: selenocysteine-specific translation elongation factor; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; Elongation factor SelB winged helix 2; Elongation factor SelB winged helix 3.
       0.562
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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