STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ribXBinding-protein-dependent transport systems inner membrane component; Part of an ABC transporter complex that transports riboflavin into the cell; Belongs to the binding-protein-dependent transport system permease family. (268 aa)    
Predicted Functional Partners:
ribY
NMT1/THI5 like domain protein; Part of an ABC transporter complex that transports riboflavin into the cell. Binds riboflavin. Belongs to the NMT1 family.
 
  
 0.988
Caur_0424
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rca:Rcas_0668 ABC transporter related.
  
 0.953
Caur_0582
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pde:Pden_4360 ABC transporter related.
  
 0.933
Caur_0425
PFAM: NMT1/THI5 like domain protein; KEGG: rca:Rcas_0667 NMT1/THI5 like domain protein.
  
 0.917
Caur_2537
PFAM: NMT1/THI5 like domain protein; KEGG: bja:bll3316 ABC transporter substrate-binding protein.
 
  
 0.910
Caur_3721
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rca:Rcas_0164 ABC transporter related.
  
 0.837
ribH
6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.
      
 0.475
ribBA
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
      
 0.473
nusB
Transcription antitermination factor NusB; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.
      
 0.473
Caur_0427
PFAM: protein of unknown function DUF77; KEGG: rrs:RoseRS_0668 protein of unknown function DUF77.
 
    0.465
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.