STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caur_1059PFAM: GAF domain protein; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: rca:Rcas_1196 protein serine phosphatase with GAF(s) sensor(s). (995 aa)    
Predicted Functional Partners:
Caur_1060
TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: rca:Rcas_1195 anti-sigma-factor antagonist.
 
 0.993
Caur_1061
TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: rca:Rcas_1194 anti-sigma-factor antagonist.
 
   0.956
Caur_0857
PAS sensor protein; KEGG: rrs:RoseRS_3536 putative PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
 
 
 0.908
Caur_3274
PAS sensor protein; KEGG: sfu:Sfum_0942 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: PAS fold-4 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein.
  
 
 0.903
Caur_1442
Histidine kinase; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rca:Rcas_3114 multi-sensor signal transduction histidine kinase.
 
 
 0.873
Caur_2056
PAS sensor protein; KEGG: rca:Rcas_2148 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein.
 
 
 0.873
Caur_3341
PAS sensor protein; KEGG: rca:Rcas_3671 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
 
 
 0.873
Caur_1383
PAS sensor protein; KEGG: rrs:RoseRS_3026 signal transduction histidine kinase, nitrogen specific, NtrB; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
 
 
0.869
Caur_0466
PAS sensor protein; KEGG: rca:Rcas_2148 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
 
 
0.855
Caur_1012
TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: mem:Memar_2467 anti-sigma-factor antagonist.
 
   0.851
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
Server load: medium (74%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.