STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caur_1091TIGRFAM: conserved repeat domain protein; PFAM: protein of unknown function DUF11; KEGG: bcz:BCZK3364 conserved repeat domain protein. (1384 aa)    
Predicted Functional Partners:
Caur_1388
PFAM: Na-Ca exchanger/integrin-beta4; KEGG: afw:Anae109_2925 hypothetical protein.
  
 
0.835
Caur_1090
TIGRFAM: conserved repeat domain protein; LPXTG-motif cell wall anchor domain protein; PFAM: protein of unknown function DUF11; KEGG: bcz:BCZK3364 conserved repeat domain protein.
 
    
0.822
Caur_1089
KEGG: rrs:RoseRS_1205 hypothetical protein.
 
     0.788
Caur_1430
TIGRFAM: sortase family protein; PFAM: peptidase C60 sortase A and B; KEGG: rrs:RoseRS_4282 peptidase C60, sortase A and B.
 
     0.553
Caur_3219
PFAM: YD repeat-containing protein; KEGG: rrs:RoseRS_1682 YD repeat protein.
  
    0.430
Caur_1092
PFAM: alpha/beta hydrolase fold; KEGG: bta:505457 biphenyl hydrolase-like (serine hydrolase; breast epithelial mucin-associated antigen).
       0.426
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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