STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caur_1924KEGG: tte:TTE0290 Periplasmic sugar-binding proteins. (387 aa)    
Predicted Functional Partners:
Caur_1926
PFAM: inner-membrane translocator; KEGG: tte:TTE0292 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.
  
 0.956
Caur_1925
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fno:Fnod_1667 ABC transporter related.
  
 0.950
rbsA
ABC transporter related; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
  
 0.793
Caur_2287
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: rrs:RoseRS_2727 monosaccharide-transporting ATPase; Belongs to the binding-protein-dependent transport system permease family.
  
 0.790
Caur_2288
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: rrs:RoseRS_2726 monosaccharide-transporting ATPase; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.778
Caur_2286
ABC-type sugar transport system periplasmic component-like protein; KEGG: ret:RHE_PE00289 probable sugar ABC transporter, substrate-binding protein.
 
  
 0.555
Caur_1928
PFAM: ABC transporter related; ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; SMART: AAA ATPase; KEGG: rsh:Rsph17029_3423 ABC transporter related.
 
  
 0.536
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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