STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caur_2684PFAM: Squalene/phytoene synthase; KEGG: rrs:RoseRS_2117 squalene/phytoene synthase. (335 aa)    
Predicted Functional Partners:
Caur_1413
TIGRFAM: phytoene desaturase; PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: ana:all7255 zeta-carotene desaturase.
 
 0.998
Caur_2422
TIGRFAM: phytoene desaturase; PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: rrs:RoseRS_0943 phytoene dehydrogenase-related protein.
 
 0.998
Caur_2410
TIGRFAM: phytoene desaturase; PFAM: amine oxidase; KEGG: rca:Rcas_2535 zeta-phytoene desaturase.
  
 0.982
Caur_2352
Carotene 7,8-desaturase; PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: syc:syc2113_c phytoene dehydrogenase, phytoene desaturase.
 
 0.980
Caur_2087
TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase FAD-binding; KEGG: rca:Rcas_3751 geranylgeranyl reductase.
 
 
 0.922
Caur_1855
PFAM: Polyprenyl synthetase; KEGG: rrs:RoseRS_0533 polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
  
 0.912
Caur_1337
PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: rrs:RoseRS_3475 FAD dependent oxidoreductase.
  
 0.883
Caur_1185
PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: rrs:RoseRS_3542 NADH dehydrogenase (quinone).
     
 0.863
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
   
 
 0.860
Caur_3569
Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
   
 
 0.843
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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