Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Caur_3322 | ppa | Caur_3322 | Caur_3321 | PFAM: NUDIX hydrolase; KEGG: rrs:RoseRS_3219 NUDIX hydrolase; Belongs to the Nudix hydrolase family. | Inorganic diphosphatase; Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions. | 0.793 |
Caur_3322 | ybeY | Caur_3322 | Caur_3323 | PFAM: NUDIX hydrolase; KEGG: rrs:RoseRS_3219 NUDIX hydrolase; Belongs to the Nudix hydrolase family. | Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.775 |
ppa | Caur_3322 | Caur_3321 | Caur_3322 | Inorganic diphosphatase; Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions. | PFAM: NUDIX hydrolase; KEGG: rrs:RoseRS_3219 NUDIX hydrolase; Belongs to the Nudix hydrolase family. | 0.793 |
ppa | ybeY | Caur_3321 | Caur_3323 | Inorganic diphosphatase; Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions. | Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.910 |
ybeY | Caur_3322 | Caur_3323 | Caur_3322 | Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | PFAM: NUDIX hydrolase; KEGG: rrs:RoseRS_3219 NUDIX hydrolase; Belongs to the Nudix hydrolase family. | 0.775 |
ybeY | ppa | Caur_3323 | Caur_3321 | Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | Inorganic diphosphatase; Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions. | 0.910 |