STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caur_3575KEGG: rrs:RoseRS_2602 hypothetical protein. (75 aa)    
Predicted Functional Partners:
Caur_3574
PFAM: peptidase M50; SMART: PDZ/DHR/GLGF domain protein; KEGG: rca:Rcas_1818 peptidase M50.
       0.826
Caur_3576
Protein of unknown function DUF83; CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Belongs to the CRISPR-associated exonuclease Cas4 family.
       0.825
Caur_3578
KEGG: rca:Rcas_1814 hypothetical protein.
       0.613
Caur_3577
KEGG: rrs:RoseRS_2604 hypothetical protein.
       0.573
Caur_3573
KEGG: rca:Rcas_3314 hypothetical protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
       0.467
Caur_3572
PFAM: alpha-L-rhamnosidase; KEGG: art:Arth_1969 alpha-L-rhamnosidase.
       0.434
Caur_3571
KEGG: stp:Strop_3558 hypothetical protein.
       0.414
Your Current Organism:
Chloroflexus aurantiacus
NCBI taxonomy Id: 324602
Other names: C. aurantiacus J-10-fl, Chloroflexus aurantiacus ATCC 29366, Chloroflexus aurantiacus DSM 635, Chloroflexus aurantiacus J-10-fl, Chloroflexus aurantiacus str. J-10-fl, Chloroflexus aurantiacus strain J-10-fl
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