STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSXCOP00000020194YME1-like 1a; Belongs to the AAA ATPase family. (514 aa)    
Predicted Functional Partners:
NDUFA13
NADH:ubiquinone oxidoreductase subunit A13.
   
   0.844
ENSXCOP00000023126
Translocase of inner mitochondrial membrane domain containing 1.
   
   0.842
Clpx
Uncharacterized protein.
  
  
 0.759
ENSXCOP00000008501
Stomatin (EPB72)-like 2.
   
 0.745
ENSXCOP00000007690
Prohibitin.
   
 0.678
PHB2
Prohibitin.
   
 0.678
Mrpl27
Mitochondrial ribosomal protein L27.
  
 
 0.662
Mrpl17
Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.
   
 
 0.649
Rpl23
Ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family.
   
 
 0.647
ENSXCOP00000011590
OMA1 zinc metallopeptidase.
  
 
 0.644
Your Current Organism:
Xiphophorus couchianus
NCBI taxonomy Id: 32473
Other names: Limia couchiana, Monterrey platyfish, X. couchianus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.