STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114147206Charged multivesicular body protein 5a. (220 aa)    
Predicted Functional Partners:
ENSXCOP00000026284
Vesicle (multivesicular body) trafficking 1.
   
 0.973
ENSXCOP00000011526
AAA domain-containing protein; Belongs to the AAA ATPase family.
   
 0.970
VPS4B
Vacuolar protein sorting 4 homolog B; Belongs to the AAA ATPase family.
   
 0.970
vps4a
Vacuolar protein sorting 4 homolog A; Belongs to the AAA ATPase family.
   
 0.970
ENSXCOP00000004588
Charged multivesicular body protein 2A.
   
 0.944
Ist1
IST1 factor associated with ESCRT-III.
    
 
 0.910
CHMP4B
Charged multivesicular body protein 4Bb.
  
0.904
chmp3
Charged multivesicular body protein 3.
   
 0.901
LOC114136748
Charged multivesicular body protein 5b.
  
  
 
0.900
Chmp4b
Uncharacterized protein.
   
 0.896
Your Current Organism:
Xiphophorus couchianus
NCBI taxonomy Id: 32473
Other names: Limia couchiana, Monterrey platyfish, X. couchianus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.