STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LGAS_0947Hypothetical protein. (248 aa)    
Predicted Functional Partners:
LGAS_1457
NUDIX family hydrolase.
 
     0.634
LGAS_1410
ABC-type polysaccharide/polyol phosphate export system, permease component.
 
  
 0.584
LGAS_0923
Predicted membrane-bound metal-dependent hydrolase.
  
     0.570
LGAS_0406
Uncharacterized conserved secreted or membrane protein.
  
  
 0.551
LGAS_0945
Predicted hydrolase (HAD superfamily).
 
     0.514
LGAS_0742
Hypothetical protein.
  
     0.495
LGAS_1262
Predicted integral membrane protein.
 
    0.494
LGAS_0889
LysM domain.
  
   0.478
LGAS_1546
Aggregation promoting factrelated surface protein.
  
   0.475
LGAS_0938
Predicted integral membrane protein.
 
   
 0.464
Your Current Organism:
Lactobacillus gasseri
NCBI taxonomy Id: 324831
Other names: L. gasseri ATCC 33323 = JCM 1131, Lactobacillus gasseri ATCC 33323, Lactobacillus gasseri ATCC 33323 = JCM 1131, Lactobacillus gasseri DSM 20243, Lactobacillus gasseri NCDO 2233
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.