STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LGAS_1451Hypothetical protein; Belongs to the UPF0342 family. (117 aa)    
Predicted Functional Partners:
LGAS_1448
Predicted HD-superfamily hydrolase.
 
    0.877
LGAS_1449
DNA repair ATPase.
       0.838
LGAS_1450
DNA repair exonuclease.
       0.838
LGAS_1452
Membrane carboxypeptidase (penicillin-binding protein).
       0.790
LGAS_1453
Pseudouridylate synthase, 23S RNA-specific.
       0.625
LGAS_0795
Hypothetical protein.
  
    0.613
LGAS_0433
Methyl-accepting chemotaxis-like protein.
  
     0.563
LGAS_0268
CBS domain containing protein.
 
     0.555
LGAS_1417
Replicative DNA helicase loader DnaB.
 
     0.425
Your Current Organism:
Lactobacillus gasseri
NCBI taxonomy Id: 324831
Other names: L. gasseri ATCC 33323 = JCM 1131, Lactobacillus gasseri ATCC 33323, Lactobacillus gasseri ATCC 33323 = JCM 1131, Lactobacillus gasseri DSM 20243, Lactobacillus gasseri NCDO 2233
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.