STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LGAS_1880Amino acid/polyamine/organocation transporter, APC superfamily; TC 2.A.3. (492 aa)    
Predicted Functional Partners:
LGAS_1881
Ornithine decarboxylase.
 
  
 0.814
LGAS_1882
Cystathionine beta-lyase family protein.
 
     0.770
LGAS_0214
Alpha-glucosidase.
  
 0.535
LGAS_0215
Neopullulanase; Belongs to the glycosyl hydrolase 13 family.
  
 0.535
LGAS_0222
Trehalose-6-phosphate hydrolase.
  
 0.535
LGAS_0518
Trehalose-6-phosphate hydrolase.
  
 0.535
LGAS_0533
Alpha, alpha-phosphotrehalase.
  
 0.535
LGAS_1341
3-oxoacyl-acyl carrier protein reductase.
 
   
 0.479
LGAS_0818
ATPase component of ABC transporter with duplicated ATPase domain.
 
   
 0.420
Your Current Organism:
Lactobacillus gasseri
NCBI taxonomy Id: 324831
Other names: L. gasseri ATCC 33323 = JCM 1131, Lactobacillus gasseri ATCC 33323, Lactobacillus gasseri ATCC 33323 = JCM 1131, Lactobacillus gasseri DSM 20243, Lactobacillus gasseri NCDO 2233
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.