STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppha_1737Transcriptional modulator of MazE/toxin, MazF; Toxic component of a type II toxin-antitoxin (TA) system. (115 aa)    
Predicted Functional Partners:
Ppha_1736
Hypothetical protein.
       0.773
Ppha_2826
KEGG: cph:Cpha266_1379 transcriptional regulator, CopG family.
  
 
 0.651
Ppha_0264
Transcriptional regulator/antitoxin, MazE; PFAM: SpoVT/AbrB domain protein; KEGG: rrs:RoseRS_3308 transcriptional regulator/antitoxin, MazE.
  
 
 0.595
Ppha_1371
Transcriptional regulator/antitoxin, MazE; TIGRFAM: addiction module antidote; PFAM: SpoVT/AbrB domain protein; KEGG: cph:Cpha266_2175 transcriptional regulator/antitoxin, MazE.
  
 
 0.595
Ppha_1745
KEGG: cch:Cag_0678 hypothetical protein.
  
 
 0.558
lysS
TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: cch:Cag_1176 lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.
       0.526
Ppha_1735
PFAM: DNA polymerase beta domain protein region; KEGG: swo:Swol_0221 hypothetical protein.
       0.523
Ppha_1734
TIGRFAM: nucleotidyltransferase substrate binding protein, HI0074 family; PFAM: Nucleotidyltransferase substrate binding protein HI0074; KEGG: swo:Swol_0220 nucleotidyltransferase substrate-binding protein, putative.
       0.519
Ppha_2278
KEGG: noc:Noc_0061 hypothetical protein.
  
     0.404
Your Current Organism:
Pelodictyon phaeoclathratiforme
NCBI taxonomy Id: 324925
Other names: P. phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme BU-1, Pelodictyon phaeoclathratiforme DSM 5477, Pelodictyon phaeoclathratiforme str. BU-1, Pelodictyon phaeoclathratiforme strain BU-1
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