STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sbal_0723PFAM: ABC-2 type transporter; KEGG: son:SO3801 ABC transporter, permease protein. (256 aa)    
Predicted Functional Partners:
Sbal_0722
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO3802 ABC transporter, ATP-binding protein.
  
 0.975
Sbal_0643
Protein of unknown function DUF181; TIGRFAM: uncharacterized domain; PFAM: OsmC family protein; protein of unknown function DUF181; KEGG: sfr:Sfri_0738 uncharacterized domain.
  
  
 0.694
Sbal_1808
PFAM: nitroreductase; KEGG: shm:Shewmr7_2374 nitroreductase.
  
  
 0.677
Sbal_3396
PFAM: nitroreductase; KEGG: shn:Shewana3_0876 nitroreductase.
  
  
 0.653
Sbal_1559
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO1750 ABC transporter, ATP-binding protein.
  
 0.620
Sbal_1523
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: shn:Shewana3_2749 ABC transporter related.
 
  
 0.551
Sbal_4276
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: she:Shewmr4_0076 ABC transporter related.
  
  
 0.551
Sbal_1763
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: shm:Shewmr7_1627 ABC transporter related.
 
  
 0.529
ubiX
3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family.
  
    0.523
mpl
UDP-N-acetylmuramate; Reutilizes the intact tripeptide L-alanyl-gamma-D-glutamyl- meso-diaminopimelate by linking it to UDP-N-acetylmuramate. Belongs to the MurCDEF family. Mpl subfamily.
       0.509
Your Current Organism:
Shewanella baltica
NCBI taxonomy Id: 325240
Other names: S. baltica OS155, Shewanella baltica OS155, Shewanella baltica str. OS155, Shewanella baltica strain OS155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.