STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sbal_1769PFAM: S-adenosylmethionine decarboxylase; KEGG: shn:Shewana3_1625 S-adenosylmethionine decarboxylase. (313 aa)    
Predicted Functional Partners:
metK
Methionine adenosyltransferase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.
   
 
 0.928
speE
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
     
  0.900
Sbal_3878
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.
     
  0.900
Sbal_0851
KEGG: shm:Shewmr7_3220 spermine synthase.
    
 0.682
pdxH
Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).
     
 0.679
speA
Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine.
     
 0.567
Sbal_2507
KEGG: she:Shewmr4_1643 hypothetical protein.
  
     0.509
Sbal_1771
PFAM: protein of unknown function DUF188; KEGG: shn:Shewana3_1627 protein of unknown function DUF188; Belongs to the UPF0178 family.
       0.502
Sbal_1590
KEGG: shn:Shewana3_2675 decaheme cytochrome c.
  
     0.470
Sbal_1626
KEGG: shn:Shewana3_2633 conserved hypothetical protein; Belongs to the UPF0319 family.
  
     0.466
Your Current Organism:
Shewanella baltica
NCBI taxonomy Id: 325240
Other names: S. baltica OS155, Shewanella baltica OS155, Shewanella baltica str. OS155, Shewanella baltica strain OS155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.