STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hutIKEGG: son:SO0095 imidazolonepropionase; Belongs to the metallo-dependent hydrolases superfamily. HutI family. (412 aa)    
Predicted Functional Partners:
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
 
 
 0.993
Sama_3201
KEGG: sdn:Sden_0462 arginase/agmatinase/formiminoglutamase; Belongs to the arginase family.
 
 
 0.952
Sama_1631
KEGG: sru:SRU_0722 histidine ammonia-lyase.
 
  
 0.925
Sama_0081
Transcriptional regulator, histidine utilization repressor, GntR family; KEGG: son:SO0096 histidine utilization repressor.
 
  
 0.895
Sama_3385
KEGG: son:SO4374 histidine ammonia-lyase, putative.
 
  
 0.890
Sama_0070
KEGG: mlo:mlr8324 hypothetical protein.
 
   
 0.767
Sama_0079
KEGG: bur:Bcep18194_A4870 putative esterase.
       0.441
Your Current Organism:
Shewanella amazonensis
NCBI taxonomy Id: 326297
Other names: S. amazonensis SB2B, Shewanella amazonensis SB2B, Shewanella amazonensis str. SB2B, Shewanella amazonensis strain SB2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.