STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sama_0252KEGG: son:SO0272 competence/damage-inducible protein CinA; Belongs to the CinA family. (424 aa)    
Predicted Functional Partners:
nadD
Nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).
 
 
 0.974
Sama_1609
KEGG: son:SO1862 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
  
 0.957
Sama_0371
KEGG: sdn:Sden_3387 nicotinate-nucleotide pyrophosphorylase; Belongs to the NadC/ModD family.
    
 0.951
Sama_0182
KEGG: son:SO0177 HAD-superfamily hydrolase, subfamily IA, variant 3 protein family.
    
  0.918
Sama_0285
KEGG: son:SO0372 HAD-superfamily hydrolase, subfamily IA, variant 1 protein family.
    
  0.918
surE
3'-nucleotidase / exopolyphosphatase / 5'-nucleotidase; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.
    
  0.918
Sama_2021
5'-nucleotidase; KEGG: sdn:Sden_2137 5'-nucleotidase; Belongs to the 5'-nucleotidase family.
  
 
  0.915
Sama_2370
KEGG: son:SO3317 5'-nucleotidase, putative; Belongs to the 5'-nucleotidase family.
  
 
  0.915
Sama_1034
KEGG: son:SO3442 MazG family protein.
  
  
  0.913
Sama_2340
KEGG: son:SO3276 hypothetical protein.
   
    0.783
Your Current Organism:
Shewanella amazonensis
NCBI taxonomy Id: 326297
Other names: S. amazonensis SB2B, Shewanella amazonensis SB2B, Shewanella amazonensis str. SB2B, Shewanella amazonensis strain SB2B
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