STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sama_0725KEGG: son:SO3749 hypothetical protein. (274 aa)    
Predicted Functional Partners:
Sama_2746
KEGG: son:SO0943 sensory box protein, putative.
  
     0.606
Sama_0723
KEGG: son:SO3754 hypothetical protein.
 
     0.595
Sama_3336
KEGG: son:SO0312 outer membrane porin, putative.
  
     0.559
Sama_0109
KEGG: son:SO4681 glycosyl transferase, group 1 family protein.
  
     0.544
Sama_0724
Zn-dependent peptidase-like protein; KEGG: tfu:Tfu_2363 putative zinc proteinase.
       0.543
carA
KEGG: son:SO1141 carbamoyl-phosphate synthase, small subunit; Belongs to the CarA family.
      
 0.538
Sama_1603
KEGG: son:SO1854 hypothetical protein.
  
     0.521
Sama_0129
KEGG: son:SO4714 hypothetical protein.
  
     0.518
Sama_3405
KEGG: son:SO4402 hypothetical protein.
  
     0.511
Sama_1246
KEGG: son:SO1816 hypothetical protein; Belongs to the UPF0319 family.
  
     0.508
Your Current Organism:
Shewanella amazonensis
NCBI taxonomy Id: 326297
Other names: S. amazonensis SB2B, Shewanella amazonensis SB2B, Shewanella amazonensis str. SB2B, Shewanella amazonensis strain SB2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.