STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
katG2Catalase; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily. (738 aa)    
Predicted Functional Partners:
Sama_2941
Catalase; KEGG: son:SO1070 catalase; Belongs to the catalase family.
    
 0.934
Sama_0750
Catalase-like protein; Has an organic peroxide-dependent peroxidase activity. Belongs to the catalase family.
    
 0.909
hisC
KEGG: son:SO2072 histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
     
 0.903
katG1
Catalase; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily.
  
  
 
0.903
Sama_1733
Aminotransferase; KEGG: sfr:Sfri_2126 aspartate transaminase.
     
 0.902
Sama_1805
Aminotransferase; KEGG: son:SO2350 aspartate aminotransferase.
     
 0.902
Sama_2222
KEGG: son:SO1666 phenylalanine-4-hydroxylase.
     
  0.900
Sama_2792
KEGG: ppr:PBPRB0529 hypothetical acetyltransferase.
     
  0.900
Sama_3417
KEGG: son:SO4413 hypothetical kynureninase.
     
  0.900
Sama_0898
KEGG: son:SO1367 prephenate dehydratase / chorismate mutase / phospho-2-dehydro-3-deoxyheptonate aldolase.
     
  0.800
Your Current Organism:
Shewanella amazonensis
NCBI taxonomy Id: 326297
Other names: S. amazonensis SB2B, Shewanella amazonensis SB2B, Shewanella amazonensis str. SB2B, Shewanella amazonensis strain SB2B
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